dsRNA-seq Reveals Novel RNA Virus and Virus-Like Putative Complete Genome Sequences from Hymeniacidon sp. Sponge.
Identifieur interne : 000000 ( Main/Exploration ); suivant : 000001dsRNA-seq Reveals Novel RNA Virus and Virus-Like Putative Complete Genome Sequences from Hymeniacidon sp. Sponge.
Auteurs : Syun-Ichi Urayama ; Yoshihiro Takaki ; Daisuke Hagiwara ; Takuro NunouraSource :
- Microbes and environments [ 1347-4405 ] ; 2020.
Descripteurs français
- KwdFr :
- MESH :
- génétique : ARN double brin, ARN viral, Virus à ARN.
- isolement et purification : Virus à ARN.
- virologie : Organismes aquatiques, Porifera.
- Analyse de séquence d'ADN, Animaux, Génome viral, Phylogenèse.
English descriptors
- KwdEn :
- MESH :
- chemical , genetics : RNA, Double-Stranded, RNA, Viral.
- classification : RNA Viruses.
- isolation & purification : RNA Viruses.
- virology : Aquatic Organisms, Porifera.
- Animals, Genome, Viral, Phylogeny, RNA-Seq, Sequence Analysis, DNA.
Abstract
Invertebrates are a source of previously unknown RNA viruses that fill gaps in the viral phylogenetic tree. Although limited information is currently available on RNA viral diversity in the marine sponge, a primordial multicellular animal that belongs to the phylum Porifera, the marine sponge is one of the well-studied holobiont systems. In the present study, we elucidated the putative complete genome sequences of five novel RNA viruses from Hymeniacidon sponge using a combination of double-stranded RNA sequencing, called fragmented and primer ligated dsRNA sequencing, and a conventional transcriptome method targeting single-stranded RNA. We identified highly diverged RNA-dependent RNA polymerase sequences, including a potential novel RNA viral lineage, in the sponge and three viruses presumed to infect sponge cells.
DOI: 10.1264/jsme2.ME19132
PubMed: 32115438
PubMed Central: PMC7308569
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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Sponge.</title><author><name sortKey="Urayama, Syun Ichi" sort="Urayama, Syun Ichi" uniqKey="Urayama S" first="Syun-Ichi" last="Urayama">Syun-Ichi Urayama</name><affiliation><nlm:affiliation>Research Center for Bioscience and Nanoscience (CeBN), Japan Agency for Marine-Earth Science and Technology (JAMSTEC).</nlm:affiliation><wicri:noCountry code="subField">Japan Agency for Marine-Earth Science and Technology (JAMSTEC)</wicri:noCountry></affiliation><affiliation><nlm:affiliation>Laboratory of Fungal Interaction and Molecular Biology (donated by IFO), Department of Life and Environmental Sciences, University of Tsukuba.</nlm:affiliation><wicri:noCountry code="subField">University of Tsukuba</wicri:noCountry></affiliation><affiliation><nlm:affiliation>Microbiology Research Center for Sustainability (MiCS), University of Tsukuba.</nlm:affiliation><wicri:noCountry code="subField">University of Tsukuba</wicri:noCountry></affiliation></author><author><name sortKey="Takaki, Yoshihiro" sort="Takaki, Yoshihiro" uniqKey="Takaki Y" first="Yoshihiro" last="Takaki">Yoshihiro Takaki</name><affiliation><nlm:affiliation>Super-cutting-edge Grand and Advanced Research (SUGAR) Program.</nlm:affiliation><wicri:noCountry code="no comma">Super-cutting-edge Grand and Advanced Research (SUGAR) Program.</wicri:noCountry></affiliation></author><author><name sortKey="Hagiwara, Daisuke" sort="Hagiwara, Daisuke" uniqKey="Hagiwara D" first="Daisuke" last="Hagiwara">Daisuke Hagiwara</name><affiliation><nlm:affiliation>Laboratory of Fungal Interaction and Molecular Biology (donated by IFO), Department of Life and Environmental Sciences, University of Tsukuba.</nlm:affiliation><wicri:noCountry code="subField">University of Tsukuba</wicri:noCountry></affiliation><affiliation><nlm:affiliation>Microbiology Research Center for Sustainability (MiCS), University of Tsukuba.</nlm:affiliation><wicri:noCountry code="subField">University of Tsukuba</wicri:noCountry></affiliation></author><author><name sortKey="Nunoura, Takuro" sort="Nunoura, Takuro" uniqKey="Nunoura T" first="Takuro" last="Nunoura">Takuro Nunoura</name><affiliation><nlm:affiliation>Research Center for Bioscience and Nanoscience (CeBN), Japan Agency for Marine-Earth Science and Technology (JAMSTEC).</nlm:affiliation><wicri:noCountry code="subField">Japan Agency for Marine-Earth Science and Technology (JAMSTEC)</wicri:noCountry></affiliation></author></analytic><series><title level="j">Microbes and environments</title><idno type="eISSN">1347-4405</idno><imprint><date when="2020" type="published">2020</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Animals (MeSH)</term><term>Aquatic Organisms (virology)</term><term>Genome, Viral (MeSH)</term><term>Phylogeny (MeSH)</term><term>Porifera (virology)</term><term>RNA Viruses (classification)</term><term>RNA Viruses (isolation & purification)</term><term>RNA, Double-Stranded (genetics)</term><term>RNA, Viral (genetics)</term><term>RNA-Seq (MeSH)</term><term>Sequence Analysis, DNA (MeSH)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>ARN double brin (génétique)</term><term>ARN viral (génétique)</term><term>Analyse de séquence d'ADN (MeSH)</term><term>Animaux (MeSH)</term><term>Génome viral (MeSH)</term><term>Organismes aquatiques (virologie)</term><term>Phylogenèse (MeSH)</term><term>Porifera (virologie)</term><term>Virus à ARN (classification)</term><term>Virus à ARN (isolement et purification)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>RNA, Double-Stranded</term><term>RNA, Viral</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>RNA Viruses</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>ARN double brin</term><term>ARN viral</term><term>Virus à ARN</term></keywords><keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>RNA Viruses</term></keywords><keywords scheme="MESH" qualifier="isolement et purification" xml:lang="fr"><term>Virus à ARN</term></keywords><keywords scheme="MESH" qualifier="virologie" xml:lang="fr"><term>Organismes aquatiques</term><term>Porifera</term></keywords><keywords scheme="MESH" qualifier="virology" xml:lang="en"><term>Aquatic Organisms</term><term>Porifera</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Animals</term><term>Genome, Viral</term><term>Phylogeny</term><term>RNA-Seq</term><term>Sequence Analysis, DNA</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Analyse de séquence d'ADN</term><term>Animaux</term><term>Génome viral</term><term>Phylogenèse</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Invertebrates are a source of previously unknown RNA viruses that fill gaps in the viral phylogenetic tree. Although limited information is currently available on RNA viral diversity in the marine sponge, a primordial multicellular animal that belongs to the phylum Porifera, the marine sponge is one of the well-studied holobiont systems. In the present study, we elucidated the putative complete genome sequences of five novel RNA viruses from Hymeniacidon sponge using a combination of double-stranded RNA sequencing, called fragmented and primer ligated dsRNA sequencing, and a conventional transcriptome method targeting single-stranded RNA. We identified highly diverged RNA-dependent RNA polymerase sequences, including a potential novel RNA viral lineage, in the sponge and three viruses presumed to infect sponge cells.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">32115438</PMID><DateCompleted><Year>2020</Year><Month>10</Month><Day>09</Day></DateCompleted><DateRevised><Year>2020</Year><Month>10</Month><Day>09</Day></DateRevised><Article PubModel="Print"><Journal><ISSN IssnType="Electronic">1347-4405</ISSN><JournalIssue CitedMedium="Internet"><Volume>35</Volume><Issue>2</Issue><PubDate><Year>2020</Year></PubDate></JournalIssue><Title>Microbes and environments</Title><ISOAbbreviation>Microbes Environ</ISOAbbreviation></Journal><ArticleTitle>dsRNA-seq Reveals Novel RNA Virus and Virus-Like Putative Complete Genome Sequences from Hymeniacidon sp. Sponge.</ArticleTitle><ELocationID EIdType="doi" ValidYN="Y">10.1264/jsme2.ME19132</ELocationID><Abstract><AbstractText>Invertebrates are a source of previously unknown RNA viruses that fill gaps in the viral phylogenetic tree. Although limited information is currently available on RNA viral diversity in the marine sponge, a primordial multicellular animal that belongs to the phylum Porifera, the marine sponge is one of the well-studied holobiont systems. In the present study, we elucidated the putative complete genome sequences of five novel RNA viruses from Hymeniacidon sponge using a combination of double-stranded RNA sequencing, called fragmented and primer ligated dsRNA sequencing, and a conventional transcriptome method targeting single-stranded RNA. We identified highly diverged RNA-dependent RNA polymerase sequences, including a potential novel RNA viral lineage, in the sponge and three viruses presumed to infect sponge cells.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Urayama</LastName><ForeName>Syun-Ichi</ForeName><Initials>SI</Initials><AffiliationInfo><Affiliation>Research Center for Bioscience and Nanoscience (CeBN), Japan Agency for Marine-Earth Science and Technology (JAMSTEC).</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Laboratory of Fungal Interaction and Molecular Biology (donated by IFO), Department of Life and Environmental Sciences, University of Tsukuba.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Microbiology Research Center for Sustainability (MiCS), University of Tsukuba.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Takaki</LastName><ForeName>Yoshihiro</ForeName><Initials>Y</Initials><AffiliationInfo><Affiliation>Super-cutting-edge Grand and Advanced Research (SUGAR) Program.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Hagiwara</LastName><ForeName>Daisuke</ForeName><Initials>D</Initials><AffiliationInfo><Affiliation>Laboratory of Fungal Interaction and Molecular Biology (donated by IFO), Department of Life and Environmental Sciences, University of Tsukuba.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Microbiology Research Center for Sustainability (MiCS), University of Tsukuba.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Nunoura</LastName><ForeName>Takuro</ForeName><Initials>T</Initials><AffiliationInfo><Affiliation>Research Center for Bioscience and Nanoscience (CeBN), Japan Agency for Marine-Earth Science and Technology 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first="Takuro" last="Nunoura">Takuro Nunoura</name><name sortKey="Takaki, Yoshihiro" sort="Takaki, Yoshihiro" uniqKey="Takaki Y" first="Yoshihiro" last="Takaki">Yoshihiro Takaki</name><name sortKey="Urayama, Syun Ichi" sort="Urayama, Syun Ichi" uniqKey="Urayama S" first="Syun-Ichi" last="Urayama">Syun-Ichi Urayama</name></noCountry></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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